ConnectBooks
Shopify → QuickBooks Online, Desktop & Enterprise

QuickBooks for Shopify sellers, reconciled to the penny.

ConnectBooks syncs every Shopify sale, fee and refund, online and POS, into QuickBooks or Xero, matches each payout to your bank deposit, and shows your real net profit per SKU.

Free 1:1 setup with a pro bookkeeper, on every plan · 30 days free · Live US support

Book a demoSee how ConnectBooks posts your Shopify payouts to QuickBooks, matched to the penny.
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Know your real profit on every Shopify sale.

Sales, fees and refunds, online and POS, post to the right QuickBooks accounts automatically. COGS comes from your real product costs, and every payout matches your bank to the penny.

Trusted by 5,000+ sellers

Problem

One Shopify deposit. Dozens of transactions hiding inside it.

Shopify sends one net deposit. Inside are online and POS sales, fees and refunds. QuickBooks only sees the net deposit.

Sound familiar?

Shopify Payments, PayPal and other gateways each pay out on their own schedule, net of fees.

Your bank shows one deposit per gateway, but QuickBooks needs the sales, fees and refunds behind it.

Shopify POS sales and online orders end up mixed together, or missing.

Refunds land in a later payout than the sale they reverse.

You update product costs in a spreadsheet and hope they’re current.

Cost

What messy Shopify books are really costing you.

Hours you don’t get back.

Manually splitting payouts from every gateway, every week.

“We gained back three out of every four hours we used to waste on bookkeeping manually. Now we use that time to up our sales and margins.”

Esti Szegedin, CEO & Founder, Exponent Management

Profit you think you have.

Fees, returns and ad spend hide inside each SKU’s margin.

“Before ConnectBooks, we thought we were making $2-3 profit on our hottest SKU, and actually we were losing money. It definitely tripled or more our bottom line.”

Hannah Jay, Bookkeeper, Gift Essentials

A tax-time scramble.

1099-K forms report gross payments. If your books aren’t reconciled, the numbers won’t line up when your CPA asks.

Paying someone to translate Shopify.

Hours of an accountant’s time spent decoding payout reports.

Accounting

Built by bookkeepers who speak Shopify.

Shopify’s payout reports don’t look like anything your bookkeeper has seen before. That’s why ConnectBooks was built by bookkeepers, and why our live US support team knows QuickBooks, Xero and ecommerce bookkeeping.

Every payout matched to the bank deposit, to the penny

Closed months stay closed

Every entry traceable to the order and SKU

Payouts that match your bank

Every Shopify payout broken into sales, fees and refunds, and matched to the bank deposit, to the penny.

PayPal, Shopify Payments and more

Reconcile orders paid through PayPal, Shopify Payments and more.

Shopify POS in the mix

In-store POS sales sync alongside online orders, so nothing is missing.

Every refund reconciled

Every refund categorized and reconciled.

Tax time in seconds

Taxes done in seconds. P&L in a click, 1099-K matched.

Hidden costs, found

Know which items caused which fees, with breakeven and P&L per product.

Profit per SKU

COGS from your real product costs and net profit by SKU, after every fee.

Selling on Amazon too?

Shopify and Amazon in the same books, each payout matched to its own deposit.

Setup

Clean Shopify books in 3 steps.

No migration project. A pro bookkeeper sets up your account with you, 1:1, free on every plan.

1

Book a demo, or try free for 30 days.

See ConnectBooks on a live call, then connect Shopify and QuickBooks (Online, Desktop or Enterprise) or Xero.

2

Get set up free, 1:1, by a pro bookkeeper.

They map your accounts the way you (or your accountant) want.

3

Press sync.

Each payout posts with sales, fees and refunds broken out, ready to match to your bank deposit. Profit per SKU waits in the dashboard.

Reviews

Sellers who stopped fixing their books.

“Spent hours the first few months manually checking it line-by-line to make sure it’s correct, and the reconciliation is perfect to the penny, absolutely error-free.”

Ben Schaya, Mom & Baby Supplies Inc.

“Their automation keeps us lean on accounting, and their reporting helped us triple our net profits.”

Robert Gomez, Founder, kaffe Products

“Advanced software but old fashion unparalleled Customer Service. You actually get to talk to a live human and they know their stuff cold.”

SamW, verified user, Intuit QuickBooks App Store

FAQ

Questions Shopify sellers ask.

Straight answers about ConnectBooks, Shopify, QuickBooks and Xero. Still have a question? Call 845 751 1600.

Does it work with my version of QuickBooks?

Yes: QuickBooks Online, Desktop and Enterprise, plus Xero.

Does it handle Shopify Payments and PayPal?

Yes. Reconcile orders paid through PayPal, Shopify Payments and more. Orders, taxes, fees, returns and payments post accurately in QuickBooks or Xero.

Is Shopify POS included?

Yes. POS sales sync alongside online orders.

How do I know the numbers are right?

Every entry traces back to its payout, and our 100% accuracy guarantee means books that balance to the penny, or your money back. See the guarantee terms.

Will it duplicate what’s already in QuickBooks?

One clean entry per payout, ready to match to your deposit.

I sell on Amazon too.

Amazon, Walmart, eBay, TikTok Shop and Temu are supported in the same books.

What does it cost?

Every plan includes free 1:1 setup and 30 days free. See current plans on our pricing page.

Who helps me if I’m stuck?

Live US phone, email and chat support. Call 845 751 1600.

Guarantee

Books that balance, or your money back.

Our 100% accuracy guarantee: books that balance to the penny, or your money back. A pro bookkeeper sets you up 1:1, free, on every plan. Prefer to explore first? Try free for 30 days.

See the guarantee terms →

Free 1:1 setup on every plan
30-day free trial

Your next Shopify payout can be your first clean one.

Before

Splitting gateway deposits by hand, guessing at COGS, dreading tax time.

After

Press sync, every payout tied to your bank, real profit per SKU, Shopify and Amazon in one set of books.

Book a demo today. A pro bookkeeper will set you up, free, on every plan.

Free 1:1 setup on every plan · 30-day free trial · Live US support

Rather talk now? Call 845 751 1600.